HLA

Biology

Hardy-Weinberg Lab Analysis Calculator

Derive observed allele frequency, generate expected genotype counts at the entered reference p, and expose the heterozygote difference and replicate-size context.

Observed sample size-
Observed allele A frequency-
Observed allele a frequency-
Expected AA count at reference p-
Expected heterozygous count at reference p-
Expected aa count at reference p-
Observed minus expected heterozygotes-
Average observations per replicate-

Decision view

Observed versus expected genotype composition

Observed versus expected genotype compositionObserved genotype counts establish the sample allele frequency before the selected reference p generates expected counts.
Exact scenario comparisonReference allele A frequency changes while all other entered assumptions remain constant.
Reference allele A frequencyObserved sample sizeObserved allele A frequencyObserved allele a frequencyExpected AA count at reference pExpected heterozygous count at reference pExpected aa count at reference pObserved minus expected heterozygotesAverage observations per replicate

How to use Hardy-Weinberg Lab Analysis Calculator

  1. Verify genotype labels and sample size.
  2. Compare observed p with the entered reference p.
  3. Use a formal test when inference is required.

Calculator guide

Understanding Hardy-Weinberg Lab Analysis Calculator

A Hardy-Weinberg lab comparison begins with observed genotype counts and a clearly stated reference allele frequency.

Alleles from counts Genotypes determine observed p.
Reference is explicit Expected counts use entered p.
Direction matters Heterozygote excess and deficit differ.
Inference separate Formal testing needs specialist methods.

Calculation method

How the calculation works

Derive the observed allele frequency from genotype counts and compare the complete observed sample with Hardy-Weinberg expectations at a selected reference frequency. Count two A alleles in AA and one in Aa, divide by twice the sample size, then apply p², 2p(1−p), and (1−p)² to the selected reference frequency.

Lab interpretation

Audit departures before assigning biology

A mismatch can arise from biology, sampling, or measurement.

Sampling Small or unrepresentative samples fluctuate.
Genotyping Calling errors alter genotype counts.
Structure Mixed subpopulations can create deficits.
Mechanism Selection or mating claims require evidence.

Worked situations

Practical examples

  • AA contributes two A alleles.
  • Expected counts sum to sample size apart from rounding.
  • Observed minus expected heterozygotes preserves direction.

Better inputs

Useful tips

  • Check expected cell counts.
  • Investigate genotyping error.
  • Account for population structure and relatedness.

Before relying on the result

Limitations and common mistakes

  • This is descriptive, not a chi-square or exact test.
  • Selection, migration, mutation, structure, relatedness, multiple alleles, and ploidy are excluded.
  • Replicates are summarized only by average size.

Reference

Key terms

Observed p
A-allele frequency derived from genotype counts.
Expected heterozygotes
2p(1−p) multiplied by sample size.
Reference p
Entered allele frequency used for expected counts.
Replicate
Separately collected sample or experimental unit.

Important note

Calculated from the entered values using the displayed biological or statistical model. Study design, sampling, measurement quality, and biological variation affect interpretation.

Frequently asked questions

Does this test equilibrium?

No.

Why can observed p differ from reference p?

The reference is user-selected rather than fitted automatically.

Do expected counts sum to the sample?

Yes mathematically, subject to display rounding.

Are replicate counts analyzed separately?

No.